Mathematical Cell Biology; May 2012 Homework assignments: Homework and activities for Week 3: Set 1 will be based on the HW problems on the site for Jun Allard's Material NEW! Here is Set 2 Lectures and Course Material You can find the topics covered, lecture notes, and links to material in the table below. Here is some reference material with some further details on topics covered on week 1 and few topics from week 2. Course Notes Week 3 Guest lecturers for Week 3: Dr. Raibatak (Dodo) Das and Dr William (Bill) R Holmes (Dept of Mathematics, UBC). Link to Bill's Material Dates Topics Rough Notes Other Material Lecture (video) May 14-18 Dodo Das Lectures Slides Lecture 1 Slides Lecture 2 Slides Lecture 3 Slides Lecture 4 Matlab Files: NonlinearRegressionMakeDat.m Hill.m NonlinearRegressionResiduals.m NonlinearRegression.m PolynomialRegression.m NonlinearRegressionAsympCI.m SimpleLinearRegression.m NonlinearRegressionBootstrapCI.m Data Files: linModelFit.dat DoseResponseData.dat See MathTube May 14-18 Holmes Lectures Bill's Material See MathTube May 14-18 Keshet Lectures Slides: Lecture 10 Lecture 11 Lecture 12 See MathTube May 14-18 Morphogenesis (Drosophilla) Early divisions Complete sequence Wieschaus iBioSem 1 May 14-18 Stability Analysis Here May 14-18 Pattern Formation (RD) Here SchnakenRD.ode cable100a.ani Overview: reaction-diffusion equations and Turing patterns (5:21 min) Detailed Calculations (Turing LSA) (8:56 min) XPP RD system integration (3:34 min) May 14-18 Chemotaxis: Keller-Segel Model Nonlocal model (1) Keller-Segel Chemotaxis model (7:49 min) (2) Nonlocal chemotaxis model (5:49 min) Return to Course Home Page